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Lab Notes: Building a GenePT Cell Typer - Part 3

Jul 28, 202510 min read

Lab Notes: Building a GenePT Cell Typer - Part 2

Jul 5, 20257 min read

Introducing the AnnData DuckDB extension

At MiraOmics we look at a lot of H5AD files. We have a database of over a thousand of them, not to mention several of the public data sources. Pretty much every time I have a new file, the first thing I want to do is run a few queries on it to under...

Jan 12, 202613 min read

Lab Notes: Building a GenePT Cell Typer - Part 1

Jun 28, 20255 min read

Lab Notes: Custom GenePT embeddings

Mar 5, 20259 min read

Lab Notes: Comparing GenePT and scGPT

In the spirit of “Learning in Public,” and “learning exhaust,” I’m going to start adding “Lab Notes” blog posts that chronicle little discoveries or failures that I have along the way to a larger goal. This is the first! Background I’m collaborating ...

Feb 20, 20259 min read